(4-2(p))
(3-4(p))
| Date | Phase | Home | Away | |||
|---|---|---|---|---|---|---|
| 26/10/2016 | round_4 | Slavia Praha | | 7-0 | | FK Litomerice |
| 30/11/2016 | round_4 | Karviná | | 2-2 (4-2(p)) | | Dukla |
| 01/03/2017 | round_4 | Sezimovo Ústí | | 1-3 | | Liberec |
| 26/03/2017 | QF | Opava | | 2-1 | | Brno |
| 04/04/2017 | QF | Bohemians 1905 | | 1-1 (3-4(p)) | | Mladá Boleslav |
| 05/04/2017 | QF | Liberec | | 2-4 | | Zlín |
| 12/04/2017 | QF | Slavia Praha | | 5-2 | | Karviná |
| 25/04/2017 | SF | Slavia Praha | | 0-1 | | Zlín |
| 26/04/2017 | SF | Mladá Boleslav | | 0-2 | | Opava |
| 17/05/2017 | F | Opava | | 0-1 | | Zlín |