| Date | Phase | Home | Away | |||
|---|---|---|---|---|---|---|
| 28/02/2013 | Quarter-finals | PAOK | | 2-0 | | Levadiakos |
| 06/03/2013 | Quarter-finals | Levadiakos | | 0-0 | | PAOK |
| 13/03/2013 | Quarter-finals | Panthrakikos | | 1-0 | | Veria |
| 13/03/2013 | Quarter-finals | Olympiacos | | 2-0 | | Giannina |
| 14/03/2013 | Quarter-finals | Asteras | | 3-1 | | Platanias |
| 17/04/2013 | Semi-finals | PAOK | | 2-1 | | Asteras |
| 18/04/2013 | Semi-finals | Olympiacos | | 6-2 | | Panthrakikos |
| 27/04/2013 | Semi-finals | Asteras | | 2-0 | | PAOK |
| 28/04/2013 | Semi-finals | Panthrakikos | | 1-2 | | Olympiacos |
| 11/05/2013 | Final | Asteras | | 1-3 | | Olympiacos |