| Date | Phase | Home | Away | |||
|---|---|---|---|---|---|---|
| 14/10/2012 | Quarter-finals | Shkëndija | | 1-0 | | Metalurg Skopje |
| 07/11/2012 | Quarter-finals | Pelister | | 0-1 | | Vardar |
| 21/11/2012 | Quarter-finals | Metalurg Skopje | | 1-5 | | Shkëndija |
| 21/11/2012 | Quarter-finals | Sileks | | 3-0 | | Drita |
| 21/11/2012 | Quarter-finals | Renova | | 0-1 | | Teteks |
| 21/11/2012 | Quarter-finals | Vardar | | 2-0 | | Pelister |
| 17/04/2013 | Semi-finals | Sileks | | 0-1 | | Teteks |
| 17/04/2013 | Semi-finals | Shkëndija | | 0-0 | | Vardar |
| 01/05/2013 | Semi-finals | Teteks | | 2-0 | | Sileks |
| 01/05/2013 | Semi-finals | Vardar | | 1-1 | | Shkëndija |