| Date | Phase | Home | Away | |||
|---|---|---|---|---|---|---|
| 24/10/2012 | Quarter-finals | Slovan Bratislava | 2-0 | Ružomberok | ||
| 06/11/2012 | Quarter-finals | Spartak Myjava | 3-1 | Košice | ||
| 06/11/2012 | Quarter-finals | Ružomberok | 3-1 | Slovan Bratislava | ||
| 06/11/2012 | Quarter-finals | Spartak Trnava | 3-1 | Banská Bystrica | ||
| 06/11/2012 | Quarter-finals | Žilina | 1-2 (4-2(p)) | Senica | ||
| 09/04/2013 | Semi-finals | Žilina | 3-2 | Spartak Trnava | ||
| 09/04/2013 | Semi-finals | Košice | 0-3 | Slovan Bratislava | ||
| 16/04/2013 | Semi-finals | Spartak Trnava | 1-1 | Žilina | ||
| 16/04/2013 | Semi-finals | Slovan Bratislava | 3-1 | Košice | ||
| 01/05/2013 | Final | Žilina | 0-2 | Slovan Bratislava |